Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1RX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1RX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1RX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1RX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 109508867 total, 63124 skipped (flags/unmapped)
Fragments: 54968296 total (54431176 tlen-paired, 3772 hash-paired, 640 singletons, 13521 discordant, 519187 orphans, 14489 too large [>5000 bp], 21268719 duplicates)
Reads: 101785366 total, 68177 skipped (flags/unmapped)
Fragments: 51087119 total (50579080 tlen-paired, 3672 hash-paired, 537 singletons, 18130 discordant, 485700 orphans, 14594 too large [>5000 bp], 20380000 duplicates)
Reads: 108198077 total, 63560 skipped (flags/unmapped)
Fragments: 54308551 total (53765648 tlen-paired, 3884 hash-paired, 459 singletons, 15436 discordant, 523124 orphans, 20499 too large [>5000 bp], 21672986 duplicates)
Reads: 120103898 total, 116904 skipped (flags/unmapped)
Fragments: 60492473 total (58918673 tlen-paired, 3273 hash-paired, 502 singletons, 313735 discordant, 1256290 orphans, 129420 too large [>5000 bp], 24061693 duplicates)