Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_2ZR-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_2ZR-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_2ZR-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_2ZR-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67001622 total, 48156 skipped (flags/unmapped)
Fragments: 33670999 total (33250638 tlen-paired, 2209 hash-paired, 349 singletons, 9674 discordant, 408129 orphans, 9973 too large [>5000 bp], 11811867 duplicates)
Reads: 71624592 total, 39745 skipped (flags/unmapped)
Fragments: 35999543 total (35561060 tlen-paired, 1804 hash-paired, 403 singletons, 6538 discordant, 429738 orphans, 7951 too large [>5000 bp], 12290607 duplicates)
Reads: 77712353 total, 43235 skipped (flags/unmapped)
Fragments: 39061613 total (38568691 tlen-paired, 2073 hash-paired, 321 singletons, 10007 discordant, 480521 orphans, 13367 too large [>5000 bp], 13738205 duplicates)
Reads: 79680620 total, 70433 skipped (flags/unmapped)
Fragments: 40267414 total (38815138 tlen-paired, 1242 hash-paired, 392 singletons, 289443 discordant, 1161199 orphans, 118475 too large [>5000 bp], 14115119 duplicates)