Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2GX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2GX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2GX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2GX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64698197 total, 42858 skipped (flags/unmapped)
Fragments: 32431239 total (32194687 tlen-paired, 2174 hash-paired, 329 singletons, 11553 discordant, 222496 orphans, 7843 too large [>5000 bp], 10527476 duplicates)
Reads: 68380260 total, 37656 skipped (flags/unmapped)
Fragments: 34280947 total (34025322 tlen-paired, 3498 hash-paired, 253 singletons, 10151 discordant, 241723 orphans, 11343 too large [>5000 bp], 11124674 duplicates)
Reads: 69664910 total, 35581 skipped (flags/unmapped)
Fragments: 34923360 total (34681118 tlen-paired, 1912 hash-paired, 397 singletons, 8913 discordant, 231020 orphans, 7013 too large [>5000 bp], 10986161 duplicates)
Reads: 75999987 total, 61808 skipped (flags/unmapped)
Fragments: 38176656 total (37532187 tlen-paired, 2133 hash-paired, 293 singletons, 125535 discordant, 516508 orphans, 50834 too large [>5000 bp], 12403979 duplicates)