Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_17X-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_17X-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_17X-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_17X-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92162153 total, 61255 skipped (flags/unmapped)
Fragments: 46173161 total (45887114 tlen-paired, 3610 hash-paired, 372 singletons, 14691 discordant, 267374 orphans, 11161 too large [>5000 bp], 16283846 duplicates)
Reads: 97951601 total, 50608 skipped (flags/unmapped)
Fragments: 49077817 total (48792969 tlen-paired, 2602 hash-paired, 525 singletons, 9657 discordant, 272064 orphans, 8974 too large [>5000 bp], 16907150 duplicates)
Reads: 108003966 total, 91067 skipped (flags/unmapped)
Fragments: 54207427 total (53430252 tlen-paired, 3265 hash-paired, 416 singletons, 147183 discordant, 626311 orphans, 62386 too large [>5000 bp], 19228361 duplicates)
Reads: 106953586 total, 57819 skipped (flags/unmapped)
Fragments: 53591644 total (53249314 tlen-paired, 4164 hash-paired, 424 singletons, 14985 discordant, 322757 orphans, 17830 too large [>5000 bp], 18940460 duplicates)