Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1MZ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1MZ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1MZ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1MZ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75570592 total, 51336 skipped (flags/unmapped)
Fragments: 37873160 total (37608160 tlen-paired, 2975 hash-paired, 379 singletons, 14217 discordant, 247429 orphans, 10372 too large [>5000 bp], 12478836 duplicates)
Reads: 81418383 total, 42790 skipped (flags/unmapped)
Fragments: 40805564 total (40540382 tlen-paired, 2425 hash-paired, 379 singletons, 9812 discordant, 252566 orphans, 8705 too large [>5000 bp], 13127166 duplicates)
Reads: 88169523 total, 49050 skipped (flags/unmapped)
Fragments: 44191945 total (43874288 tlen-paired, 5198 hash-paired, 335 singletons, 15186 discordant, 296938 orphans, 16928 too large [>5000 bp], 14593622 duplicates)
Reads: 88740035 total, 78411 skipped (flags/unmapped)
Fragments: 44556680 total (43864072 tlen-paired, 3219 hash-paired, 400 singletons, 130223 discordant, 558766 orphans, 53715 too large [>5000 bp], 14722233 duplicates)