Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_TA7-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_TA7-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_TA7-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_TA7-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75762798 total, 48456 skipped (flags/unmapped)
Fragments: 37951743 total (37730425 tlen-paired, 3811 hash-paired, 320 singletons, 11227 discordant, 205960 orphans, 8568 too large [>5000 bp], 12651080 duplicates)
Reads: 81442858 total, 40714 skipped (flags/unmapped)
Fragments: 40799284 total (40577852 tlen-paired, 2462 hash-paired, 410 singletons, 7798 discordant, 210762 orphans, 7374 too large [>5000 bp], 13291565 duplicates)
Reads: 89401450 total, 74870 skipped (flags/unmapped)
Fragments: 44857663 total (44260547 tlen-paired, 3541 hash-paired, 386 singletons, 112893 discordant, 480296 orphans, 45968 too large [>5000 bp], 15027445 duplicates)
Reads: 89051877 total, 47323 skipped (flags/unmapped)
Fragments: 44606029 total (44355032 tlen-paired, 4381 hash-paired, 372 singletons, 11914 discordant, 234330 orphans, 13599 too large [>5000 bp], 14904307 duplicates)