Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_36E-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_36E-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_36E-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_36E-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75865378 total, 43359 skipped (flags/unmapped)
Fragments: 38102150 total (37691343 tlen-paired, 2212 hash-paired, 444 singletons, 9654 discordant, 398497 orphans, 8330 too large [>5000 bp], 13009907 duplicates)
Reads: 71604660 total, 52268 skipped (flags/unmapped)
Fragments: 35957792 total (35555398 tlen-paired, 3277 hash-paired, 352 singletons, 13949 discordant, 384816 orphans, 10988 too large [>5000 bp], 12569453 duplicates)
Reads: 83152003 total, 46056 skipped (flags/unmapped)
Fragments: 41760862 total (41291677 tlen-paired, 2526 hash-paired, 357 singletons, 13972 discordant, 452330 orphans, 18455 too large [>5000 bp], 14643706 duplicates)
Reads: 84488197 total, 75656 skipped (flags/unmapped)
Fragments: 42612653 total (41346007 tlen-paired, 2017 hash-paired, 425 singletons, 247940 discordant, 1016264 orphans, 101962 too large [>5000 bp], 14905030 duplicates)