Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1ME-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1ME-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1ME-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1ME-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 118648013 total, 82327 skipped (flags/unmapped)
Fragments: 59464164 total (59044943 tlen-paired, 3719 hash-paired, 595 singletons, 20936 discordant, 393971 orphans, 15962 too large [>5000 bp], 23267295 duplicates)
Reads: 126551311 total, 66600 skipped (flags/unmapped)
Fragments: 63433243 total (63005687 tlen-paired, 3561 hash-paired, 569 singletons, 15102 discordant, 408324 orphans, 13559 too large [>5000 bp], 24235010 duplicates)
Reads: 125133514 total, 74078 skipped (flags/unmapped)
Fragments: 62724072 total (62238159 tlen-paired, 8460 hash-paired, 521 singletons, 19205 discordant, 457727 orphans, 34770 too large [>5000 bp], 24680835 duplicates)
Reads: 138588341 total, 125769 skipped (flags/unmapped)
Fragments: 69593499 total (68463866 tlen-paired, 3228 hash-paired, 600 singletons, 219839 discordant, 905966 orphans, 91070 too large [>5000 bp], 27425991 duplicates)