Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2ZF-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_2ZF-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_2ZF-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2ZF-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72397501 total, 42809 skipped (flags/unmapped)
Fragments: 36364722 total (35960974 tlen-paired, 2236 hash-paired, 415 singletons, 8448 discordant, 392649 orphans, 9156 too large [>5000 bp], 12688823 duplicates)
Reads: 68380811 total, 47848 skipped (flags/unmapped)
Fragments: 34344629 total (33955621 tlen-paired, 3030 hash-paired, 338 singletons, 12267 discordant, 373373 orphans, 8708 too large [>5000 bp], 12316419 duplicates)
Reads: 79444717 total, 44204 skipped (flags/unmapped)
Fragments: 39906476 total (39435272 tlen-paired, 2449 hash-paired, 290 singletons, 12228 discordant, 456237 orphans, 22044 too large [>5000 bp], 14331856 duplicates)
Reads: 80622111 total, 72819 skipped (flags/unmapped)
Fragments: 40678531 total (39416803 tlen-paired, 1759 hash-paired, 374 singletons, 247157 discordant, 1012438 orphans, 102521 too large [>5000 bp], 14588476 duplicates)