Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_3SA-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3SA-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3SA-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3SA-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75335559 total, 52286 skipped (flags/unmapped)
Fragments: 37827650 total (37426232 tlen-paired, 2204 hash-paired, 370 singletons, 11299 discordant, 387545 orphans, 7944 too large [>5000 bp], 13498145 duplicates)
Reads: 80744103 total, 45353 skipped (flags/unmapped)
Fragments: 40541883 total (40129148 tlen-paired, 2299 hash-paired, 509 singletons, 7708 discordant, 402219 orphans, 8856 too large [>5000 bp], 14038773 duplicates)
Reads: 88032954 total, 49956 skipped (flags/unmapped)
Fragments: 44204954 total (43720083 tlen-paired, 4179 hash-paired, 372 singletons, 11716 discordant, 468604 orphans, 21033 too large [>5000 bp], 15789154 duplicates)
Reads: 89918703 total, 81155 skipped (flags/unmapped)
Fragments: 45342873 total (44006921 tlen-paired, 3147 hash-paired, 429 singletons, 264563 discordant, 1067813 orphans, 110022 too large [>5000 bp], 16163733 duplicates)