Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0YI-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_0YI-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_0YI-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0YI-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 37472852 total, 49223 skipped (flags/unmapped)
Fragments: 19205760 total (18198256 tlen-paired, 3143 hash-paired, 263 singletons, 3738 discordant, 1000360 orphans, 6366 too large [>5000 bp], 8490258 duplicates)
Reads: 38676585 total, 50411 skipped (flags/unmapped)
Fragments: 19828678 total (18780402 tlen-paired, 2935 hash-paired, 392 singletons, 2723 discordant, 1042226 orphans, 5718 too large [>5000 bp], 8550350 duplicates)
Reads: 43044605 total, 50457 skipped (flags/unmapped)
Fragments: 22067163 total (20888287 tlen-paired, 4822 hash-paired, 256 singletons, 4236 discordant, 1169562 orphans, 14820 too large [>5000 bp], 9750503 duplicates)
Reads: 47156011 total, 93674 skipped (flags/unmapped)
Fragments: 24768727 total (20830542 tlen-paired, 2966 hash-paired, 383 singletons, 791678 discordant, 3143158 orphans, 334212 too large [>5000 bp], 10193779 duplicates)