Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1O-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1O-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_1O-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_1O-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87837570 total, 64602 skipped (flags/unmapped)
Fragments: 44112975 total (43610555 tlen-paired, 3550 hash-paired, 591 singletons, 20854 discordant, 477425 orphans, 12517 too large [>5000 bp], 14629893 duplicates)
Reads: 93603566 total, 56056 skipped (flags/unmapped)
Fragments: 47005707 total (46499673 tlen-paired, 2946 hash-paired, 620 singletons, 13934 discordant, 488534 orphans, 12625 too large [>5000 bp], 15306818 duplicates)
Reads: 101613599 total, 59524 skipped (flags/unmapped)
Fragments: 51028651 total (50462062 tlen-paired, 3455 hash-paired, 563 singletons, 20531 discordant, 542040 orphans, 19688 too large [>5000 bp], 17052951 duplicates)
Reads: 102727722 total, 99655 skipped (flags/unmapped)
Fragments: 51795198 total (50306163 tlen-paired, 2966 hash-paired, 608 singletons, 285940 discordant, 1199521 orphans, 118900 too large [>5000 bp], 17218184 duplicates)