Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_S7R-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_S7R-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_S7R-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_S7R-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92069630 total, 50426 skipped (flags/unmapped)
Fragments: 46165581 total (45824003 tlen-paired, 3668 hash-paired, 567 singletons, 6628 discordant, 330715 orphans, 9662 too large [>5000 bp], 14286665 duplicates)
Reads: 86774138 total, 60345 skipped (flags/unmapped)
Fragments: 43507190 total (43170289 tlen-paired, 4124 hash-paired, 497 singletons, 9698 discordant, 322582 orphans, 11246 too large [>5000 bp], 13741863 duplicates)
Reads: 100798073 total, 94120 skipped (flags/unmapped)
Fragments: 50693476 total (49614663 tlen-paired, 3644 hash-paired, 469 singletons, 209416 discordant, 865284 orphans, 91377 too large [>5000 bp], 16100760 duplicates)
Reads: 99895289 total, 55619 skipped (flags/unmapped)
Fragments: 50089361 total (49688908 tlen-paired, 3997 hash-paired, 432 singletons, 9970 discordant, 386054 orphans, 23717 too large [>5000 bp], 15921827 duplicates)