Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ06-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ06-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ06-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ06-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 33731157 total, 41617 skipped (flags/unmapped)
Fragments: 17272445 total (16401684 tlen-paired, 1790 hash-paired, 312 singletons, 2261 discordant, 866398 orphans, 5680 too large [>5000 bp], 7090559 duplicates)
Reads: 35527752 total, 49439 skipped (flags/unmapped)
Fragments: 18179270 total (17276159 tlen-paired, 3951 hash-paired, 356 singletons, 3331 discordant, 895473 orphans, 7801 too large [>5000 bp], 7635667 duplicates)
Reads: 39227005 total, 45015 skipped (flags/unmapped)
Fragments: 20080412 total (19067813 tlen-paired, 3188 hash-paired, 236 singletons, 3355 discordant, 1005820 orphans, 13611 too large [>5000 bp], 8362517 duplicates)
Reads: 41809102 total, 82473 skipped (flags/unmapped)
Fragments: 21895756 total (18557469 tlen-paired, 2768 hash-paired, 411 singletons, 625772 discordant, 2709336 orphans, 322432 too large [>5000 bp], 8506425 duplicates)