Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1K2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1K2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1K2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1K2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 94840612 total, 68644 skipped (flags/unmapped)
Fragments: 47634077 total (47090698 tlen-paired, 4471 hash-paired, 602 singletons, 19280 discordant, 519026 orphans, 11721 too large [>5000 bp], 16609786 duplicates)
Reads: 101604531 total, 57741 skipped (flags/unmapped)
Fragments: 51030994 total (50474044 tlen-paired, 3156 hash-paired, 709 singletons, 13810 discordant, 539275 orphans, 12393 too large [>5000 bp], 17429466 duplicates)
Reads: 99917003 total, 59699 skipped (flags/unmapped)
Fragments: 50189898 total (49601900 tlen-paired, 3336 hash-paired, 451 singletons, 15920 discordant, 568291 orphans, 23125 too large [>5000 bp], 17611964 duplicates)
Reads: 111457517 total, 106949 skipped (flags/unmapped)
Fragments: 56201672 total (54543766 tlen-paired, 2891 hash-paired, 553 singletons, 328889 discordant, 1325573 orphans, 136675 too large [>5000 bp], 19614684 duplicates)