Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0V1-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0V1-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0V1-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0V1-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90730166 total, 76217 skipped (flags/unmapped)
Fragments: 45594980 total (45005466 tlen-paired, 4209 hash-paired, 626 singletons, 17868 discordant, 566811 orphans, 15713 too large [>5000 bp], 16455698 duplicates)
Reads: 95680467 total, 59924 skipped (flags/unmapped)
Fragments: 48087893 total (47489710 tlen-paired, 3002 hash-paired, 645 singletons, 12464 discordant, 582072 orphans, 13737 too large [>5000 bp], 16966659 duplicates)
Reads: 106123975 total, 105570 skipped (flags/unmapped)
Fragments: 53610523 total (51722322 tlen-paired, 3962 hash-paired, 572 singletons, 367656 discordant, 1516011 orphans, 156971 too large [>5000 bp], 19277662 duplicates)
Reads: 104126858 total, 67009 skipped (flags/unmapped)
Fragments: 52337364 total (51664278 tlen-paired, 3554 hash-paired, 569 singletons, 17821 discordant, 651142 orphans, 18416 too large [>5000 bp], 18907512 duplicates)