Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_1XS-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_1XS-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_1XS-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1XS-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76527168 total, 58767 skipped (flags/unmapped)
Fragments: 38471639 total (37955213 tlen-paired, 3110 hash-paired, 433 singletons, 14871 discordant, 498012 orphans, 11784 too large [>5000 bp], 14320770 duplicates)
Reads: 91421741 total, 94026 skipped (flags/unmapped)
Fragments: 46198384 total (44508394 tlen-paired, 3186 hash-paired, 455 singletons, 340929 discordant, 1345420 orphans, 138411 too large [>5000 bp], 17080089 duplicates)
Reads: 82905949 total, 55594 skipped (flags/unmapped)
Fragments: 41681639 total (41127540 tlen-paired, 3582 hash-paired, 511 singletons, 11052 discordant, 538954 orphans, 13271 too large [>5000 bp], 15101909 duplicates)
Reads: 81578481 total, 55752 skipped (flags/unmapped)
Fragments: 41012201 total (40443554 tlen-paired, 4701 hash-paired, 443 singletons, 13129 discordant, 550374 orphans, 24572 too large [>5000 bp], 15299635 duplicates)