Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_R83-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_R83-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_R83-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_R83-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70030601 total, 51433 skipped (flags/unmapped)
Fragments: 35185467 total (34763087 tlen-paired, 3251 hash-paired, 449 singletons, 6137 discordant, 412543 orphans, 10613 too large [>5000 bp], 12637564 duplicates)
Reads: 65313101 total, 58345 skipped (flags/unmapped)
Fragments: 32798722 total (32423843 tlen-paired, 3658 hash-paired, 412 singletons, 7839 discordant, 362970 orphans, 10347 too large [>5000 bp], 12071329 duplicates)
Reads: 76080935 total, 54081 skipped (flags/unmapped)
Fragments: 38222187 total (37766439 tlen-paired, 3289 hash-paired, 392 singletons, 8585 discordant, 443482 orphans, 13177 too large [>5000 bp], 13957600 duplicates)
Reads: 77550163 total, 93471 skipped (flags/unmapped)
Fragments: 39159615 total (37808557 tlen-paired, 4249 hash-paired, 396 singletons, 272155 discordant, 1074258 orphans, 106058 too large [>5000 bp], 14138642 duplicates)