Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BO6B-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO6B-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO6B-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO6B-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 104032578 total, 74345 skipped (flags/unmapped)
Fragments: 52256711 total (51641680 tlen-paired, 4625 hash-paired, 623 singletons, 24199 discordant, 585584 orphans, 15509 too large [>5000 bp], 17536373 duplicates)
Reads: 110459000 total, 64640 skipped (flags/unmapped)
Fragments: 55479165 total (54862465 tlen-paired, 4633 hash-paired, 700 singletons, 16417 discordant, 594950 orphans, 15840 too large [>5000 bp], 18301211 duplicates)
Reads: 120136520 total, 67823 skipped (flags/unmapped)
Fragments: 60349947 total (59642679 tlen-paired, 5067 hash-paired, 570 singletons, 24294 discordant, 677337 orphans, 23355 too large [>5000 bp], 20372386 duplicates)
Reads: 122109123 total, 109834 skipped (flags/unmapped)
Fragments: 61592657 total (59751361 tlen-paired, 3405 hash-paired, 629 singletons, 354858 discordant, 1482404 orphans, 148504 too large [>5000 bp], 20757371 duplicates)