Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_XKE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_XKE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_XKE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_XKE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 56570747 total, 50585 skipped (flags/unmapped)
Fragments: 28451320 total (28032978 tlen-paired, 3359 hash-paired, 336 singletons, 12757 discordant, 401890 orphans, 9874 too large [>5000 bp], 9397995 duplicates)
Reads: 59834999 total, 43714 skipped (flags/unmapped)
Fragments: 30093787 total (29666342 tlen-paired, 2950 hash-paired, 399 singletons, 8738 discordant, 415358 orphans, 9734 too large [>5000 bp], 9684145 duplicates)
Reads: 65415258 total, 46547 skipped (flags/unmapped)
Fragments: 32904927 total (32409839 tlen-paired, 3233 hash-paired, 363 singletons, 13260 discordant, 478232 orphans, 18726 too large [>5000 bp], 10849219 duplicates)
Reads: 66518214 total, 71677 skipped (flags/unmapped)
Fragments: 33657086 total (32305556 tlen-paired, 2420 hash-paired, 332 singletons, 264339 discordant, 1084439 orphans, 108568 too large [>5000 bp], 11034500 duplicates)