Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_SUM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_SUM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_SUM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_SUM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71726155 total, 68986 skipped (flags/unmapped)
Fragments: 36089502 total (35527591 tlen-paired, 4133 hash-paired, 458 singletons, 7843 discordant, 549477 orphans, 14050 too large [>5000 bp], 14223196 duplicates)
Reads: 79206637 total, 59839 skipped (flags/unmapped)
Fragments: 39893040 total (39220316 tlen-paired, 3674 hash-paired, 567 singletons, 6452 discordant, 662031 orphans, 11658 too large [>5000 bp], 15287509 duplicates)
Reads: 84092682 total, 63594 skipped (flags/unmapped)
Fragments: 42333724 total (41631664 tlen-paired, 6974 hash-paired, 395 singletons, 7980 discordant, 686711 orphans, 24373 too large [>5000 bp], 16553738 duplicates)
Reads: 85460992 total, 110416 skipped (flags/unmapped)
Fragments: 43386029 total (41211261 tlen-paired, 3640 hash-paired, 550 singletons, 434986 discordant, 1735592 orphans, 157330 too large [>5000 bp], 16623833 duplicates)