Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BK21-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BK21-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BK21-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BK21-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 110903259 total, 77717 skipped (flags/unmapped)
Fragments: 55779812 total (54985788 tlen-paired, 3787 hash-paired, 678 singletons, 23457 discordant, 766102 orphans, 16349 too large [>5000 bp], 21102331 duplicates)
Reads: 117858459 total, 70630 skipped (flags/unmapped)
Fragments: 59273344 total (58460786 tlen-paired, 3991 hash-paired, 800 singletons, 15972 discordant, 791795 orphans, 16868 too large [>5000 bp], 21963700 duplicates)
Reads: 131134317 total, 126900 skipped (flags/unmapped)
Fragments: 66337354 total (63730140 tlen-paired, 3833 hash-paired, 679 singletons, 510912 discordant, 2091790 orphans, 212589 too large [>5000 bp], 25051175 duplicates)
Reads: 128672739 total, 73361 skipped (flags/unmapped)
Fragments: 64716412 total (63824830 tlen-paired, 3677 hash-paired, 570 singletons, 22505 discordant, 864830 orphans, 15977 too large [>5000 bp], 24601541 duplicates)