Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_ZT5-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZT5-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZT5-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZT5-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 99929875 total, 89947 skipped (flags/unmapped)
Fragments: 50267536 total (49521458 tlen-paired, 5657 hash-paired, 663 singletons, 13065 discordant, 726693 orphans, 16106 too large [>5000 bp], 20437621 duplicates)
Reads: 106911348 total, 80264 skipped (flags/unmapped)
Fragments: 53823937 total (52961492 tlen-paired, 4141 hash-paired, 755 singletons, 9582 discordant, 847967 orphans, 15966 too large [>5000 bp], 21370952 duplicates)
Reads: 116690353 total, 86484 skipped (flags/unmapped)
Fragments: 58727318 total (57796556 tlen-paired, 10690 hash-paired, 602 singletons, 13243 discordant, 906227 orphans, 28031 too large [>5000 bp], 23704830 duplicates)
Reads: 118144698 total, 148323 skipped (flags/unmapped)
Fragments: 59907836 total (57105115 tlen-paired, 6753 hash-paired, 694 singletons, 558207 discordant, 2237067 orphans, 209232 too large [>5000 bp], 23792817 duplicates)