Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BG-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BG-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BG-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BG-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81866984 total, 60151 skipped (flags/unmapped)
Fragments: 41122705 total (40642282 tlen-paired, 3648 hash-paired, 380 singletons, 17706 discordant, 458689 orphans, 10246 too large [>5000 bp], 13218088 duplicates)
Reads: 87621205 total, 51911 skipped (flags/unmapped)
Fragments: 44010296 total (43521785 tlen-paired, 2487 hash-paired, 517 singletons, 12464 discordant, 473043 orphans, 11131 too large [>5000 bp], 13904022 duplicates)
Reads: 94818861 total, 57221 skipped (flags/unmapped)
Fragments: 47626119 total (47077429 tlen-paired, 3303 hash-paired, 467 singletons, 17909 discordant, 527011 orphans, 18440 too large [>5000 bp], 15393024 duplicates)
Reads: 96081508 total, 94044 skipped (flags/unmapped)
Fragments: 48472196 total (46991061 tlen-paired, 2236 hash-paired, 487 singletons, 286773 discordant, 1191639 orphans, 117599 too large [>5000 bp], 15595948 duplicates)