Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_069-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_069-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_069-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_069-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 36173207 total, 54330 skipped (flags/unmapped)
Fragments: 18673752 total (17424634 tlen-paired, 4181 hash-paired, 251 singletons, 3172 discordant, 1241514 orphans, 6569 too large [>5000 bp], 8490891 duplicates)
Reads: 37667658 total, 52488 skipped (flags/unmapped)
Fragments: 19448975 total (18148272 tlen-paired, 3790 hash-paired, 441 singletons, 2389 discordant, 1294083 orphans, 5872 too large [>5000 bp], 8634849 duplicates)
Reads: 41801523 total, 51918 skipped (flags/unmapped)
Fragments: 21585048 total (20142070 tlen-paired, 3970 hash-paired, 244 singletons, 2943 discordant, 1435821 orphans, 7787 too large [>5000 bp], 9820659 duplicates)
Reads: 47069861 total, 90069 skipped (flags/unmapped)
Fragments: 25038165 total (20102509 tlen-paired, 3524 hash-paired, 452 singletons, 1002942 discordant, 3928738 orphans, 416326 too large [>5000 bp], 10473057 duplicates)