Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0T0-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0T0-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0T0-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0T0-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 98539214 total, 75462 skipped (flags/unmapped)
Fragments: 49498263 total (48914997 tlen-paired, 4652 hash-paired, 647 singletons, 19080 discordant, 558887 orphans, 13380 too large [>5000 bp], 17303924 duplicates)
Reads: 105064997 total, 63277 skipped (flags/unmapped)
Fragments: 52776391 total (52180777 tlen-paired, 2633 hash-paired, 718 singletons, 13385 discordant, 578878 orphans, 14267 too large [>5000 bp], 18015860 duplicates)
Reads: 102853245 total, 68651 skipped (flags/unmapped)
Fragments: 51672323 total (51033416 tlen-paired, 5574 hash-paired, 650 singletons, 16863 discordant, 615820 orphans, 28209 too large [>5000 bp], 18121330 duplicates)
Reads: 114114656 total, 117167 skipped (flags/unmapped)
Fragments: 57571168 total (55762535 tlen-paired, 4241 hash-paired, 741 singletons, 356561 discordant, 1447090 orphans, 151492 too large [>5000 bp], 20098201 duplicates)