Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_E76-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_E76-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_E76-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_E76-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85535648 total, 60880 skipped (flags/unmapped)
Fragments: 42973824 total (42456697 tlen-paired, 2853 hash-paired, 492 singletons, 17888 discordant, 495894 orphans, 11753 too large [>5000 bp], 14352089 duplicates)
Reads: 91745827 total, 54272 skipped (flags/unmapped)
Fragments: 46093218 total (45559911 tlen-paired, 3503 hash-paired, 604 singletons, 12427 discordant, 516773 orphans, 11248 too large [>5000 bp], 15118855 duplicates)
Reads: 101248498 total, 95458 skipped (flags/unmapped)
Fragments: 51100190 total (49470402 tlen-paired, 3576 hash-paired, 569 singletons, 317956 discordant, 1307687 orphans, 130458 too large [>5000 bp], 17074694 duplicates)
Reads: 99277129 total, 60745 skipped (flags/unmapped)
Fragments: 49878952 total (49258697 tlen-paired, 6091 hash-paired, 512 singletons, 18830 discordant, 594822 orphans, 26907 too large [>5000 bp], 16741692 duplicates)