Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0UK-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0UK-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0UK-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0UK-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88371027 total, 67331 skipped (flags/unmapped)
Fragments: 44427541 total (43828398 tlen-paired, 4583 hash-paired, 438 singletons, 18744 discordant, 575378 orphans, 12215 too large [>5000 bp], 16360956 duplicates)
Reads: 93576961 total, 58781 skipped (flags/unmapped)
Fragments: 47043598 total (46432769 tlen-paired, 3230 hash-paired, 528 singletons, 13315 discordant, 593756 orphans, 12634 too large [>5000 bp], 16914023 duplicates)
Reads: 92350732 total, 62273 skipped (flags/unmapped)
Fragments: 46432420 total (45789622 tlen-paired, 5314 hash-paired, 421 singletons, 16671 discordant, 620392 orphans, 22216 too large [>5000 bp], 17099377 duplicates)
Reads: 102983682 total, 98020 skipped (flags/unmapped)
Fragments: 52040803 total (50156725 tlen-paired, 1957 hash-paired, 500 singletons, 373739 discordant, 1507882 orphans, 156219 too large [>5000 bp], 19093318 duplicates)