Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0AG-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_0AG-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_0AG-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0AG-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79616303 total, 65041 skipped (flags/unmapped)
Fragments: 39995906 total (39515405 tlen-paired, 3592 hash-paired, 456 singletons, 15393 discordant, 461060 orphans, 10483 too large [>5000 bp], 14251553 duplicates)
Reads: 92412928 total, 59673 skipped (flags/unmapped)
Fragments: 46428751 total (45867200 tlen-paired, 5247 hash-paired, 518 singletons, 15377 discordant, 540409 orphans, 18340 too large [>5000 bp], 16585378 duplicates)
Reads: 84162915 total, 53749 skipped (flags/unmapped)
Fragments: 42281314 total (41792806 tlen-paired, 2787 hash-paired, 534 singletons, 10781 discordant, 474406 orphans, 10739 too large [>5000 bp], 14717406 duplicates)
Reads: 93553857 total, 97641 skipped (flags/unmapped)
Fragments: 47216970 total (45681822 tlen-paired, 2930 hash-paired, 525 singletons, 299452 discordant, 1232241 orphans, 127521 too large [>5000 bp], 16805041 duplicates)