Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_PK7-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_PK7-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_PK7-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_PK7-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81481452 total, 79892 skipped (flags/unmapped)
Fragments: 41000282 total (40355275 tlen-paired, 4860 hash-paired, 479 singletons, 10619 discordant, 629049 orphans, 15262 too large [>5000 bp], 16666767 duplicates)
Reads: 87525398 total, 71198 skipped (flags/unmapped)
Fragments: 44080552 total (43335749 tlen-paired, 3503 hash-paired, 637 singletons, 8038 discordant, 732625 orphans, 13179 too large [>5000 bp], 17399981 duplicates)
Reads: 94775192 total, 73251 skipped (flags/unmapped)
Fragments: 47713066 total (46934876 tlen-paired, 5711 hash-paired, 535 singletons, 10424 discordant, 761520 orphans, 18932 too large [>5000 bp], 19240035 duplicates)
Reads: 96713061 total, 134671 skipped (flags/unmapped)
Fragments: 49079735 total (46644660 tlen-paired, 4588 hash-paired, 538 singletons, 486111 discordant, 1943838 orphans, 181648 too large [>5000 bp], 19420523 duplicates)