Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1RC-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1RC-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1RC-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1RC-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78787179 total, 58821 skipped (flags/unmapped)
Fragments: 39580134 total (39105332 tlen-paired, 2683 hash-paired, 484 singletons, 17757 discordant, 453878 orphans, 11226 too large [>5000 bp], 13883952 duplicates)
Reads: 84100697 total, 51421 skipped (flags/unmapped)
Fragments: 42244793 total (41767888 tlen-paired, 2847 hash-paired, 492 singletons, 11938 discordant, 461628 orphans, 10905 too large [>5000 bp], 14498280 duplicates)
Reads: 91674651 total, 56118 skipped (flags/unmapped)
Fragments: 46056114 total (45502949 tlen-paired, 5194 hash-paired, 403 singletons, 18130 discordant, 529438 orphans, 18073 too large [>5000 bp], 16247466 duplicates)
Reads: 93213810 total, 95792 skipped (flags/unmapped)
Fragments: 47024206 total (45569693 tlen-paired, 3102 hash-paired, 510 singletons, 283779 discordant, 1167122 orphans, 118619 too large [>5000 bp], 16522960 duplicates)