Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_9C-N1-BDNA-01_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_9C-N1-BDNA-01_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_9C-N1-BDNA-01_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_9C-N1-BDNA-01_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93404679 total, 60306 skipped (flags/unmapped)
Fragments: 46942741 total (46363428 tlen-paired, 3301 hash-paired, 557 singletons, 12941 discordant, 562514 orphans, 10981 too large [>5000 bp], 14985863 duplicates)
Reads: 87806858 total, 71209 skipped (flags/unmapped)
Fragments: 44131747 total (43555693 tlen-paired, 3905 hash-paired, 590 singletons, 19314 discordant, 552245 orphans, 12495 too large [>5000 bp], 14312700 duplicates)
Reads: 102371865 total, 109272 skipped (flags/unmapped)
Fragments: 51713018 total (49905348 tlen-paired, 3928 hash-paired, 499 singletons, 349789 discordant, 1453454 orphans, 145255 too large [>5000 bp], 16827348 duplicates)
Reads: 101033153 total, 67011 skipped (flags/unmapped)
Fragments: 50778779 total (50107156 tlen-paired, 4952 hash-paired, 515 singletons, 19541 discordant, 646615 orphans, 27857 too large [>5000 bp], 16571177 duplicates)