Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_84H-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_84H-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_84H-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_84H-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67273549 total, 52258 skipped (flags/unmapped)
Fragments: 33782050 total (33403994 tlen-paired, 2138 hash-paired, 459 singletons, 15949 discordant, 359510 orphans, 8580 too large [>5000 bp], 10156526 duplicates)
Reads: 71044516 total, 47057 skipped (flags/unmapped)
Fragments: 35677602 total (35268132 tlen-paired, 3332 hash-paired, 378 singletons, 13739 discordant, 392021 orphans, 17327 too large [>5000 bp], 10755528 duplicates)
Reads: 72728870 total, 44200 skipped (flags/unmapped)
Fragments: 36518766 total (36132135 tlen-paired, 2169 hash-paired, 512 singletons, 11166 discordant, 372784 orphans, 10217 too large [>5000 bp], 10736919 duplicates)
Reads: 78934596 total, 81976 skipped (flags/unmapped)
Fragments: 39780916 total (38674794 tlen-paired, 2553 hash-paired, 483 singletons, 215939 discordant, 887147 orphans, 89209 too large [>5000 bp], 11983140 duplicates)