Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0HM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0HM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0HM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0HM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73342889 total, 49048 skipped (flags/unmapped)
Fragments: 36944056 total (36317116 tlen-paired, 2975 hash-paired, 609 singletons, 8330 discordant, 615026 orphans, 10682 too large [>5000 bp], 13192465 duplicates)
Reads: 69872286 total, 55201 skipped (flags/unmapped)
Fragments: 35193472 total (34589271 tlen-paired, 2893 hash-paired, 488 singletons, 11897 discordant, 588923 orphans, 9776 too large [>5000 bp], 12926998 duplicates)
Reads: 80347671 total, 52931 skipped (flags/unmapped)
Fragments: 40471063 total (39769866 tlen-paired, 5574 hash-paired, 476 singletons, 12137 discordant, 683010 orphans, 18050 too large [>5000 bp], 14800897 duplicates)
Reads: 82505195 total, 88128 skipped (flags/unmapped)
Fragments: 41883225 total (39758300 tlen-paired, 3077 hash-paired, 492 singletons, 420933 discordant, 1700423 orphans, 175766 too large [>5000 bp], 15130059 duplicates)