Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_ZOY-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZOY-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_ZOY-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZOY-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87078701 total, 68455 skipped (flags/unmapped)
Fragments: 43747695 total (43208284 tlen-paired, 3172 hash-paired, 500 singletons, 23497 discordant, 512242 orphans, 13799 too large [>5000 bp], 14905592 duplicates)
Reads: 93154362 total, 57680 skipped (flags/unmapped)
Fragments: 46793104 total (46256255 tlen-paired, 3117 hash-paired, 480 singletons, 16090 discordant, 517162 orphans, 14058 too large [>5000 bp], 15737600 duplicates)
Reads: 100726026 total, 63873 skipped (flags/unmapped)
Fragments: 50604778 total (49988117 tlen-paired, 4348 hash-paired, 468 singletons, 24058 discordant, 587787 orphans, 20426 too large [>5000 bp], 17450176 duplicates)
Reads: 101911086 total, 112793 skipped (flags/unmapped)
Fragments: 51401810 total (49839045 tlen-paired, 5262 hash-paired, 454 singletons, 297032 discordant, 1260017 orphans, 127572 too large [>5000 bp], 17693374 duplicates)