Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2DN-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2DN-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2DN-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2DN-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70095862 total, 55460 skipped (flags/unmapped)
Fragments: 35269406 total (34730993 tlen-paired, 2664 hash-paired, 531 singletons, 12659 discordant, 522559 orphans, 12340 too large [>5000 bp], 13343413 duplicates)
Reads: 73881202 total, 47281 skipped (flags/unmapped)
Fragments: 37180548 total (36620980 tlen-paired, 2268 hash-paired, 534 singletons, 8709 discordant, 548057 orphans, 10708 too large [>5000 bp], 13715022 duplicates)
Reads: 81707908 total, 51007 skipped (flags/unmapped)
Fragments: 41121188 total (40482117 tlen-paired, 3059 hash-paired, 376 singletons, 12987 discordant, 622649 orphans, 18775 too large [>5000 bp], 15548717 duplicates)
Reads: 83535691 total, 88059 skipped (flags/unmapped)
Fragments: 42316706 total (40453539 tlen-paired, 3794 hash-paired, 486 singletons, 371463 discordant, 1487424 orphans, 151065 too large [>5000 bp], 15844817 duplicates)