Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BD5A-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BD5A-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BD5A-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BD5A-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59519868 total, 42934 skipped (flags/unmapped)
Fragments: 29998214 total (29454114 tlen-paired, 1908 hash-paired, 469 singletons, 5724 discordant, 535999 orphans, 8487 too large [>5000 bp], 10650074 duplicates)
Reads: 56103803 total, 50538 skipped (flags/unmapped)
Fragments: 28272235 total (27753203 tlen-paired, 2825 hash-paired, 419 singletons, 8578 discordant, 507210 orphans, 8212 too large [>5000 bp], 10363918 duplicates)
Reads: 65699933 total, 47879 skipped (flags/unmapped)
Fragments: 33110482 total (32504036 tlen-paired, 3989 hash-paired, 419 singletons, 8221 discordant, 593817 orphans, 12663 too large [>5000 bp], 12098554 duplicates)
Reads: 67057741 total, 79187 skipped (flags/unmapped)
Fragments: 34088271 total (32203682 tlen-paired, 2133 hash-paired, 412 singletons, 375872 discordant, 1506172 orphans, 154298 too large [>5000 bp], 12250474 duplicates)