Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2GE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2GE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2GE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2GE-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67126901 total, 51486 skipped (flags/unmapped)
Fragments: 33698863 total (33337793 tlen-paired, 3749 hash-paired, 401 singletons, 13710 discordant, 343210 orphans, 10650 too large [>5000 bp], 10558026 duplicates)
Reads: 71654619 total, 40270 skipped (flags/unmapped)
Fragments: 35975280 total (35610267 tlen-paired, 2169 hash-paired, 427 singletons, 9881 discordant, 352536 orphans, 8376 too large [>5000 bp], 10994738 duplicates)
Reads: 77975908 total, 45880 skipped (flags/unmapped)
Fragments: 39149293 total (38720473 tlen-paired, 3288 hash-paired, 406 singletons, 14830 discordant, 410296 orphans, 21072 too large [>5000 bp], 12319261 duplicates)
Reads: 78613704 total, 75433 skipped (flags/unmapped)
Fragments: 39619541 total (38533777 tlen-paired, 3565 hash-paired, 420 singletons, 207464 discordant, 874315 orphans, 86962 too large [>5000 bp], 12458446 duplicates)