Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_07F-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_07F-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_07F-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_07F-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Reads: 62325677 total, 50884 skipped (flags/unmapped)
Fragments: 31339938 total (30900696 tlen-paired, 2785 hash-paired, 351 singletons, 13462 discordant, 422644 orphans, 8956 too large [>5000 bp], 10284041 duplicates)
Reads: 65940834 total, 47159 skipped (flags/unmapped)
Fragments: 33153680 total (32706583 tlen-paired, 3315 hash-paired, 473 singletons, 9295 discordant, 434014 orphans, 10401 too large [>5000 bp], 10694153 duplicates)
Reads: 72167621 total, 48731 skipped (flags/unmapped)
Fragments: 36288269 total (35778138 tlen-paired, 4556 hash-paired, 382 singletons, 13371 discordant, 491822 orphans, 17278 too large [>5000 bp], 11954970 duplicates)
Reads: 73344601 total, 81738 skipped (flags/unmapped)
Fragments: 37085788 total (35669323 tlen-paired, 2127 hash-paired, 458 singletons, 277489 discordant, 1136391 orphans, 114068 too large [>5000 bp], 12068070 duplicates)