Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1ZM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1ZM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1ZM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1ZM-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83313578 total, 60686 skipped (flags/unmapped)
Fragments: 41891941 total (41314438 tlen-paired, 2936 hash-paired, 471 singletons, 19537 discordant, 554559 orphans, 12020 too large [>5000 bp], 15008580 duplicates)
Reads: 88436627 total, 55923 skipped (flags/unmapped)
Fragments: 44471171 total (43837249 tlen-paired, 3517 hash-paired, 367 singletons, 18113 discordant, 611925 orphans, 25327 too large [>5000 bp], 15995389 duplicates)
Reads: 90137458 total, 52276 skipped (flags/unmapped)
Fragments: 45320080 total (44723278 tlen-paired, 2247 hash-paired, 509 singletons, 14361 discordant, 579685 orphans, 12608 too large [>5000 bp], 15809720 duplicates)
Reads: 99015034 total, 94598 skipped (flags/unmapped)
Fragments: 50028299 total (48231858 tlen-paired, 2835 hash-paired, 496 singletons, 358546 discordant, 1434564 orphans, 149449 too large [>5000 bp], 17891295 duplicates)