Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BDO0-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BDO0-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BDO0-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BDO0-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 31035478 total, 42679 skipped (flags/unmapped)
Fragments: 16061729 total (14913101 tlen-paired, 3661 hash-paired, 221 singletons, 2488 discordant, 1142258 orphans, 5910 too large [>5000 bp], 7199816 duplicates)
Reads: 32778834 total, 43372 skipped (flags/unmapped)
Fragments: 16972438 total (15747575 tlen-paired, 2779 hash-paired, 321 singletons, 2018 discordant, 1219745 orphans, 5326 too large [>5000 bp], 7407690 duplicates)
Reads: 35880615 total, 42251 skipped (flags/unmapped)
Fragments: 18574712 total (17235088 tlen-paired, 3718 hash-paired, 213 singletons, 2778 discordant, 1332915 orphans, 11034 too large [>5000 bp], 8331147 duplicates)
Reads: 40749686 total, 75039 skipped (flags/unmapped)
Fragments: 21784513 total (17199586 tlen-paired, 2115 hash-paired, 436 singletons, 925211 discordant, 3657165 orphans, 381611 too large [>5000 bp], 8935186 duplicates)