Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_26U-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_26U-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_26U-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_26U-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71470366 total, 55665 skipped (flags/unmapped)
Fragments: 35936652 total (35436861 tlen-paired, 2876 hash-paired, 399 singletons, 17758 discordant, 478758 orphans, 10277 too large [>5000 bp], 12174580 duplicates)
Reads: 76007704 total, 45043 skipped (flags/unmapped)
Fragments: 38215374 total (37710345 tlen-paired, 2253 hash-paired, 488 singletons, 12361 discordant, 489927 orphans, 11164 too large [>5000 bp], 12659010 duplicates)
Reads: 83175736 total, 49955 skipped (flags/unmapped)
Fragments: 41825069 total (41236990 tlen-paired, 2402 hash-paired, 408 singletons, 18304 discordant, 566965 orphans, 21508 too large [>5000 bp], 14197839 duplicates)
Reads: 84190507 total, 82768 skipped (flags/unmapped)
Fragments: 42553580 total (41002867 tlen-paired, 2998 hash-paired, 440 singletons, 299218 discordant, 1248057 orphans, 124538 too large [>5000 bp], 14417564 duplicates)