Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BKE5-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BKE5-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BKE5-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BKE5-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55990090 total, 40610 skipped (flags/unmapped)
Fragments: 28190858 total (27734311 tlen-paired, 1993 hash-paired, 350 singletons, 7136 discordant, 447068 orphans, 7591 too large [>5000 bp], 9384817 duplicates)
Reads: 52913553 total, 45393 skipped (flags/unmapped)
Fragments: 26639099 total (26201285 tlen-paired, 2323 hash-paired, 303 singletons, 9671 discordant, 425517 orphans, 7891 too large [>5000 bp], 9070565 duplicates)
Reads: 61253773 total, 45717 skipped (flags/unmapped)
Fragments: 30837808 total (30328209 tlen-paired, 2934 hash-paired, 292 singletons, 10045 discordant, 496328 orphans, 14530 too large [>5000 bp], 10500480 duplicates)
Reads: 62360846 total, 74763 skipped (flags/unmapped)
Fragments: 31626945 total (30115572 tlen-paired, 2263 hash-paired, 364 singletons, 297111 discordant, 1211635 orphans, 122096 too large [>5000 bp], 10637266 duplicates)