Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_JLC-N1-BDNA-01_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_JLC-N1-BDNA-01_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1173_JLC-N1-BDNA-01_A23MHW3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1173_JLC-N1-BDNA-01_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78955605 total, 70216 skipped (flags/unmapped)
Fragments: 39710817 total (39132281 tlen-paired, 3232 hash-paired, 515 singletons, 14665 discordant, 560124 orphans, 12197 too large [>5000 bp], 14788727 duplicates)
Reads: 82866865 total, 58935 skipped (flags/unmapped)
Fragments: 41684599 total (41088331 tlen-paired, 2776 hash-paired, 567 singletons, 10248 discordant, 582677 orphans, 10988 too large [>5000 bp], 15169046 duplicates)
Reads: 90858664 total, 65028 skipped (flags/unmapped)
Fragments: 45704701 total (45018993 tlen-paired, 3639 hash-paired, 457 singletons, 15303 discordant, 666309 orphans, 25500 too large [>5000 bp], 17054020 duplicates)
Reads: 92534669 total, 109732 skipped (flags/unmapped)
Fragments: 46835049 total (44883705 tlen-paired, 2998 hash-paired, 484 singletons, 383687 discordant, 1564175 orphans, 159749 too large [>5000 bp], 17296200 duplicates)