Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_0H2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0H2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0H2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0H2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84659699 total, 54460 skipped (flags/unmapped)
Fragments: 42473936 total (42096019 tlen-paired, 3241 hash-paired, 503 singletons, 8861 discordant, 365312 orphans, 11591 too large [>5000 bp], 13840802 duplicates)
Reads: 80010962 total, 65970 skipped (flags/unmapped)
Fragments: 40137031 total (39768382 tlen-paired, 3913 hash-paired, 459 singletons, 13212 discordant, 351065 orphans, 11227 too large [>5000 bp], 13405442 duplicates)
Reads: 93261067 total, 94983 skipped (flags/unmapped)
Fragments: 46948147 total (45804450 tlen-paired, 2268 hash-paired, 477 singletons, 221945 discordant, 919007 orphans, 94637 too large [>5000 bp], 15623013 duplicates)
Reads: 92256232 total, 59189 skipped (flags/unmapped)
Fragments: 46290846 total (45853623 tlen-paired, 5996 hash-paired, 357 singletons, 12950 discordant, 417920 orphans, 16814 too large [>5000 bp], 15430029 duplicates)