Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_203-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_203-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_203-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_203-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 98415380 total, 57073 skipped (flags/unmapped)
Fragments: 49438186 total (48877299 tlen-paired, 3003 hash-paired, 541 singletons, 13991 discordant, 543352 orphans, 12914 too large [>5000 bp], 17416603 duplicates)
Reads: 92787271 total, 67879 skipped (flags/unmapped)
Fragments: 46610381 total (46057046 tlen-paired, 3991 hash-paired, 462 singletons, 20832 discordant, 528050 orphans, 13571 too large [>5000 bp], 16746852 duplicates)
Reads: 107824496 total, 63876 skipped (flags/unmapped)
Fragments: 54167344 total (53506432 tlen-paired, 4717 hash-paired, 428 singletons, 21561 discordant, 634206 orphans, 30283 too large [>5000 bp], 19546235 duplicates)
Reads: 110064650 total, 106650 skipped (flags/unmapped)
Fragments: 55526690 total (53824062 tlen-paired, 3247 hash-paired, 491 singletons, 331813 discordant, 1367077 orphans, 136094 too large [>5000 bp], 19940313 duplicates)