Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1QH-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1QH-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1QH-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1QH-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62357842 total, 48132 skipped (flags/unmapped)
Fragments: 31396986 total (30877689 tlen-paired, 2655 hash-paired, 344 singletons, 11994 discordant, 504304 orphans, 10193 too large [>5000 bp], 11394606 duplicates)
Reads: 65896288 total, 43181 skipped (flags/unmapped)
Fragments: 33179716 total (32640521 tlen-paired, 2477 hash-paired, 354 singletons, 8269 discordant, 528095 orphans, 11062 too large [>5000 bp], 11773734 duplicates)
Reads: 72708360 total, 43048 skipped (flags/unmapped)
Fragments: 36616394 total (35990530 tlen-paired, 2259 hash-paired, 311 singletons, 13099 discordant, 610195 orphans, 21515 too large [>5000 bp], 13289750 duplicates)
Reads: 74672311 total, 73372 skipped (flags/unmapped)
Fragments: 37869314 total (36075250 tlen-paired, 2104 hash-paired, 365 singletons, 357759 discordant, 1433836 orphans, 147256 too large [>5000 bp], 13618531 duplicates)