Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_02B-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02B-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_02B-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02B-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76942397 total, 63856 skipped (flags/unmapped)
Fragments: 38732405 total (38095883 tlen-paired, 4051 hash-paired, 542 singletons, 17478 discordant, 614451 orphans, 14362 too large [>5000 bp], 14372264 duplicates)
Reads: 81387966 total, 53766 skipped (flags/unmapped)
Fragments: 40976218 total (40323028 tlen-paired, 3019 hash-paired, 528 singletons, 11483 discordant, 638160 orphans, 10226 too large [>5000 bp], 14887425 duplicates)
Reads: 89221858 total, 57657 skipped (flags/unmapped)
Fragments: 44922306 total (44198149 tlen-paired, 3013 hash-paired, 465 singletons, 16443 discordant, 704236 orphans, 12145 too large [>5000 bp], 16715230 duplicates)
Reads: 90580150 total, 93357 skipped (flags/unmapped)
Fragments: 45927747 total (43798299 tlen-paired, 2002 hash-paired, 527 singletons, 416049 discordant, 1710870 orphans, 171348 too large [>5000 bp], 16941509 duplicates)