Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BIB8-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BIB8-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BIB8-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BIB8-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82149613 total, 69501 skipped (flags/unmapped)
Fragments: 41286610 total (40753514 tlen-paired, 5646 hash-paired, 414 singletons, 10442 discordant, 516594 orphans, 11950 too large [>5000 bp], 16489111 duplicates)
Reads: 87052762 total, 64839 skipped (flags/unmapped)
Fragments: 43770091 total (43178468 tlen-paired, 4276 hash-paired, 601 singletons, 7648 discordant, 579098 orphans, 13720 too large [>5000 bp], 17054688 duplicates)
Reads: 95605878 total, 67493 skipped (flags/unmapped)
Fragments: 48060102 total (47425526 tlen-paired, 5335 hash-paired, 416 singletons, 10936 discordant, 617889 orphans, 18243 too large [>5000 bp], 19084867 duplicates)
Reads: 96783091 total, 112123 skipped (flags/unmapped)
Fragments: 48955076 total (47027511 tlen-paired, 3190 hash-paired, 483 singletons, 383029 discordant, 1540863 orphans, 151081 too large [>5000 bp], 19215179 duplicates)