Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2B2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2B2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2B2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2B2-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80433816 total, 55712 skipped (flags/unmapped)
Fragments: 40431304 total (39905849 tlen-paired, 2965 hash-paired, 522 singletons, 13940 discordant, 508028 orphans, 12023 too large [>5000 bp], 15188822 duplicates)
Reads: 86074066 total, 50019 skipped (flags/unmapped)
Fragments: 43272663 total (42712779 tlen-paired, 3208 hash-paired, 592 singletons, 10469 discordant, 545615 orphans, 12464 too large [>5000 bp], 15924090 duplicates)
Reads: 95170449 total, 89236 skipped (flags/unmapped)
Fragments: 48111694 total (46332924 tlen-paired, 3334 hash-paired, 513 singletons, 350609 discordant, 1424314 orphans, 141326 too large [>5000 bp], 17998025 duplicates)
Reads: 93305447 total, 55200 skipped (flags/unmapped)
Fragments: 46904259 total (46265513 tlen-paired, 4230 hash-paired, 427 singletons, 14647 discordant, 619442 orphans, 30799 too large [>5000 bp], 17653505 duplicates)